PlantScreenTM Systems - Complete Solutions for Automated Phenotyping
References

Over the past few years we established phenotyping platforms all over the world in private industry and academical institutions.



Publications

PlantScreenTM Phenotyping Systems

Coe R. A., Chatterjee J., Acebron K., et al. (2018). High-throughput chlorophyll fluorescence screening of Setaria viridis for mutants with altered CO2 compensation points. Functional Plant Biology.

Ganguly D. R., Crisp P. A., Eichten S. R.. et al. (2018). Maintenance of pre‐existing DNA methylation states through recurring excess‐light stress.Plant Cell and Environment. Vol. 41.

Fichman Y., Koncz Z., Reznik N., et al. (2018). SELENOPROTEIN O is a chloroplast protein involved in ROS scavenging and its absence increases dehydration tolerance in Arabidopsis thaliana. Plant Science. Vol. 270.

Rouphael Y., Spichal L., Panzarova K., et al. (2018). High-throughput Plant Phenotyping for Developing Novel Biostimulants: From Lab to Field or From Field to Lab? Front. Plant Sci. Vol 9 .

Sytar O., Zivcak M., Olsovska K., Brestic M. (2018). Perspectives in High-Throughput Phenotyping of Qualitative Traits at the Whole-Plant Level. In: Sengar R., Singh A. (eds) Eco-friendly Agro-biological Techniques for Enhancing Crop Productivity. Springer, Singapore.pp 213-243.

De Diego N., Fürst T., Humplík J. F., et al. (2017). An Automated Method for High-Throughput Screening of Arabidopsis Rosette Growth in Multi-Well Plates and Its Validation in Stress Conditions. Frontiers in Plant Science. Volume 8.

Lobos G. A., Camargo A. V., del Pozo A., et al. (2017). Editorial: Plant Phenotyping and Phenomics for Plant Breeding. Front. Plant Sci. 8.

Pavicic M., Mouhu K., Wang F., et al. (2017). Genomic and Phenomic Screens for Flower Related RING Type Ubiquitin E3 Ligases in Arabidopsis. Frontiers in Plant Scienc. Volume 8.

Rungrat T., Awlia M., Brown M. et al. (2017). Monitoring Photosynthesis by In Vivo Chlorophyll Fluorescence: Application to High-Throughput Plant Phenotyping. The Arabidopsis Book 14: e0185. 2016

Simko I., Hayes R. J. and Furbank R. T. (2017). Non-destructive Phenotyping of Lettuce Plants in Early Stages of Development with Optical Sensors. Frontiers in Plant Science. Vol.7:1985.

Sytar O., Brestic M., Zivcak M., et al. (2017). Applying hyperspectral imaging to explore natural plant diversity towards improving salt stress tolerance. In Science of The Total Environment. Volume 578. Pages 90-99.

Sytar O., Brücková K., Kovár M., et al. (2017). Nondestructive detection and biochemical quantification of buckwheat leaves using visible (VIS) and near-infrared (NIR) hyperspectral reflectanceimaging. Journal of Central European Agriculture. 18(4), p.864-878

Tschiersch H., Junker A., Meyer R. C., & Altmann, T. (2017). Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses. Plant Methods, 13, 54.

Weber J., Kunz, C., Peteinatos, G., et al. (2017). Utilization of Chlorophyll Fluorescence Imaging Technology to Detect Plant Injury by Herbicides in Sugar Beet and Soybean. Weed Technology, 1-13.

Awlia M., Nigro A., Fajkus J., Schmöckel S.M., Negrão S., Santelia D., Trtílek M., Tester M., Julkowska M.M. and Panzarová K. (2016): High-throughput non-destructive phenotyping of traits contributing to salinity tolerance in Arabidopsis thaliana. Submitted Frontiers in Plant Sciences.

Bell J. and Dee M. H. (2016). The subset-matched Jaccard index for evaluation of Segmentation for Plant Images. Front Plant Sci. 2016; 7: 1985.

Bell J. and Dee M. H. (2016). Watching plants grow – a position paper on computer vision and Arabidopsis thaliana. IET Computer Vision. Volume 11, Issue 2, March 2017, p. 113 – 121.

Bush M.S., Pierrat O, Nibau C, et al.(2016). eIF4A RNA Helicase Associates with Cyclin-Dependent Protein Kinase A in Proliferating Cells and is Modulated by Phosphorylation. Plant Physiol. 2016 Jul 7,

Cruz J. A., Savage L. J., Zegarac R., et al. (2016). Dynamic Environmental Photosynthetic Imaging Reveals Emergent Phenotypes. Cell Systems, Volume 2, Issue 6, 2016, Pages 365-377.

Humplik J.F., Lazar D., Husickova A. and Spichal L. (2015): Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses – a review. Plant Methods 11:29.

Humplik J.F., Lazar D., Fürst, T., Husickova A., Hybl, M. and Spichal L. (2015): Automated integrative high-throughput phenotyping of plant shoots: a case study of the cold-tolerance of pea (Pisum sativum L.). Plant Methods 19;11:20.

Brown T.B., Cheng R., Sirault R.R., Rungrat T., Murray K.D., Trtilek M., Furbank R.T., Badger M., Pogson B.J., and Borevitz J.O. (2014): TraitCapture: genomic and environment modelling of plant phenomic data. Current Opinion in Plant Biology 18: pp. 73-79.

Kinetic chlorophyll fluorescence Imaging


BOURDAIS G., BURDIAK P., GAUTHIER A., ET AL. (2015) Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress. PLoS Genet,. Volume 11. DOI:10.1371/journal.pgen.1005373

BEIKE A. K., LANG D., ZIMMER A. D., ET AL. (2015). Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation. The New Phytologist. Volume 205, Pages 869-881. DOI:10.1111/nph.13004

VERCRUYSSEN L., TOGNETTI V. B., GONZALEZ N., ET AL. (2015). GROWTH REGULATING FACTOR5 Stimulates Arabidopsis Chloroplast Division, Photosynthesis, and Leaf Longevity. Plant Physiology. Volume 167, Pages 817-32. DOI: 10.1104/pp.114.256180

ALINIAEIFARD S. AND VAN MEETEREN U (2014). Natural variation in stomatal response to closing stimuli among Arabidopsis thaliana accessions after exposure to low VPD as a tool to recognize the mechanism of disturbed stomatal functioning. Journal of Experimental Botany. Volume 65, Pages 6529-6542. DOI:10.1093/jxb/eru370

BEELER S., LIU H., STADLER M., ET AL. (2014). Plastidial NAD-Dependent Malate Dehydrogenase Is Critical for Embryo Development and Heterotrophic Metabolism in Arabidopsis. Plant Physiology. Volume 164, Pages 1175–1190. DOI: 10.1104/pp.113.233866

GAWROŃSKI P, WITOŃ D, VASHUTINA K., ET AL. (2014). Mitogen-Activated Protein Kinase 4 Is a Salicylic Acid-Independent Regulator of Growth But Not of Photosynthesis in Arabidopsis. Molecular Plant. Volume 7, Pages 1151–1166. DOI: http://dx.doi.org/10.1093/mp/ssu060

HURA K., HURA T., GRZESIAK M. (2014). Function of the photosynthetic apparatus of oilseed winter rape under elicitation by Phoma lingam phytotoxins in relation to carotenoid and phenolic levels Acta Physiol Plant. Volume 36, Pages 295–305 DOI:10.1007/s11738-013-1410-y

JOHNSON, S. M., LIM F. L., FINKLER A., ET AL. (2014). Transcriptomic analysis of Sorghum bicolor resp onding to combined heat and drought stress[b]. BMC genomics.,Volume 15, Page 456. DOI: 10.1186/1471-2164-15-456

GAWROŃSKI P, GÓRECKA M, BEDERSKA M, ET AL. (2013). [b]Isochorismate synthase 1 is required for thylakoid organization, optimal plastoquinone redox status, and state transitions in Arabidopsis thaliana. Journal of Experimental Botany. Volume 64, Pages 3669-3679. DOI:10.1093/jxb/ert203

HIDA E. Z., ÇAKO V., BABANI F., ET AL. (2013). Photosyntetic activity imaging of stressed-pollution plants. International Journal of Ecosystems & Ecology Sciences. Volume. 3. Page 53.

HIRTH M., DIETZEL L., STEINER S., ET AL. (2013). Photosynthetic acclimation responses of maize seedlings grown under artificial laboratory light gradients mimicking natural canopy conditions. Frontiers in Plant Science. Volume 4, Page 334. DOI: 10.3389/fpls.2013.00334

LYSKA D., ENGELMANN K., MEIERHOFF K., ET AL. (2013). A Gateway-Based Vector System for Adaptive Expression and Flexible Tagging of Proteins in Arabidopsis. PLoS ONE. Volume 8. DOI:10.1371/journal.pone.0053787

NOVÁK J, PAVLŮ J, NOVÁK O, ET AL. (2013). High cytokinin levels induce a hypersensitive-like response in tobacco. Annals of Botany. Volume 112, Pages 41-55. DOI: 10.1093/aob/mct092

PINNOLA A., DALL’OSTO L., GEROTTO C ET AL. (2013) Zeaxanthin Binds to Light-Harvesting Complex Stress-Related Protein to Enhance Nonphotochemical Quenching in Physcomitrella patens. The Plant Cell. Volume 25, Pages 3519-3534. DOI: http://dx.doi.org/10.1105/tpc.113.114538
http://www.plantcell.org/content/25/9/3519.full

WITUSZYŃSKA .W, GAŁĄZKA K., RUSACZONEK A., ET AL.(2013). Multivariable environmental conditions promote photosynthetic adaptation potential in Arabidopsis thaliana. J Plant Physiol. Volume 170, Pages 548-59. DOI: 10.1016/j.jplph.2012.11.016

Click HERE to view entire list of references for kinetic chlorophyll fluorescence imaging.

Posters

High-throughput screening tools for identification of traits contributing to salinity tolerance in Arabidopsis thaliana. Awlia M., Nigro A., Fajkus J., Trtílek M., Tester M., Julkowska M.M. and Panzarová K.

2nd COST meeting, 17-19th April. 2016 Copenhagen DN

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STP13, a sugar transporter contributing to salinity stress tolerance in Arabidopsis thaliana. Arianna Nigro, Klára Panzarová and Diana Santelia.

Phenotyping for photosynthesis and productivity, University of Essex, 4 - 6 August 2016, UK


Using automated high-throughput phenotyping to quantify and visualize early stress responses in plants. Panzarová K., Fajkus J., Benedikty Z. and Trtílek M.

EPPN Metting, 11-12th November 2015 Barcelona SP

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Application of high throughput phenotyping via PlantScreenTM System to study early plant stress responses to progressive drought stress. Šimková K., Madhavan S., Benedikty Z. , Santelia D. and Trtílek M.

Phenodays 29-31st October 2014, Beaune FR

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PlantScreenTM as a new tool for high throughput plant phenotyping. Šimková K., Suchomelova M., Benedikty Z. and Trtílek M.

Phenodays 10-12th October 2012, Wageningen NL

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